David Roazen 0d93330ab9 Fix bug in the PerSampleDownsamplingReadsIterator that could lead to excessive memory usage at traversal startup ... This is a MUST-HAVE update for GATK 2.3 users who want to try out the new ability to use -dcov with ReadWalkers.		2012-12-19 02:05:36 -05:00
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R	Fix a nasty bug in reading GATK reports with a single line	2012-09-10 20:14:13 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
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java	Fix bug in the PerSampleDownsamplingReadsIterator that could lead to excessive memory usage at traversal startup	2012-12-19 02:05:36 -05:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Update GATK packaging settings to package arbitrary resources	2012-11-28 15:26:05 -05:00
perl	Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters)	2012-06-07 16:56:32 -04:00
scala	Bringing latest performance updates from the GATK to CMI	2012-12-05 21:40:03 -05:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00