depristo dfc36c1e95 Restructuring of the mandatory read filters for traversals. Now everything uses ReadFilters, even for the required filters like being mapped for LocusWalkers. Statistics now tracked for each read filter used during the traversal and info emitted in INFO at the end. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3445 348d0f76-0448-11de-a6fe-93d51630548a		2010-05-26 22:12:25 +00:00
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providers	Restructuring of the mandatory read filters for traversals. Now everything uses ReadFilters, even for the required filters like being mapped for LocusWalkers. Statistics now tracked for each read filter used during the traversal and info emitted in INFO at the end.	2010-05-26 22:12:25 +00:00
shards	Switched over to reviewed version of Picard patch. In process, did some optimization to the IntervalSharder	2010-05-08 14:12:22 +00:00
simpleDataSources	Restructuring of the mandatory read filters for traversals. Now everything uses ReadFilters, even for the required filters like being mapped for LocusWalkers. Statistics now tracked for each read filter used during the traversal and info emitted in INFO at the end.	2010-05-26 22:12:25 +00:00
BAMFileStat.java	Switched over to reviewed version of Picard patch. In process, did some optimization to the IntervalSharder	2010-05-08 14:12:22 +00:00
DataSourceGenerationException.java	Changed dataSources to datasources, to be consistant with the rest of our package names. Also, this makes me champion in the largest check-in contest.	2009-06-11 18:13:22 +00:00
package-info.java	Turn javadoc comments for packages and classes into key/value pairs in a properties file. Embed the properties file	2009-12-04 20:08:41 +00:00