Mauricio Carneiro 77a03c9709 Patching special case in the adaptor clipping ... * if the adaptor boundary is more than MAXIMUM_ADAPTOR_SIZE bases away from the read, then let's not clip anything and consider the fragment to be undetermined for this read pair. * updated md5's accordingly		2012-01-11 17:47:44 -05:00
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ArtificialPatternedSAMIteratorUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
ArtificialSAMFileWriterUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
ArtificialSAMQueryIteratorUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
ArtificialSAMUtilsUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
ReadUtilsUnitTest.java	Patching special case in the adaptor clipping	2012-01-11 17:47:44 -05:00