Mark DePristo b06074d6e7 Updated SortingVCFWriterBase to use PriorityBlockingQueue so that the class is thread-safe ... -- Uses PriorityBlockingQueue instead of PriorityQueue -- synchronized keywords added to all key functions that modify internal state Note that this hasn't been tested extensivesly. Based on report: http://getsatisfaction.com/gsa/topics/missing_loci_output_in_multi_thread_mode_when_implement_sortingvcfwriterbase?utm_content=topic_link&utm_medium=email&utm_source=new_topic		2012-01-13 09:33:16 -05:00
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R	queueJobReport now compresses PDF when running R 2.13+.	2012-01-10 17:32:30 -05:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Updated SortingVCFWriterBase to use PriorityBlockingQueue so that the class is thread-safe	2012-01-13 09:33:16 -05:00
packages	Revved Picard to incorporate tfennell's AsyncSAMFileWriter.	2011-12-06 10:37:42 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Merged bug fix from Stable into Unstable	2012-01-10 16:16:10 -05:00
testdata	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00