Mark DePristo 61f0c46423 Rev tribble to 110. Log is: ... Optimization for PositionalBufferedStream with specialized read(byte, int, int) method -- For binary codecs having an efficient reader of lots of bytes that doesn't fall back into read() itself vastly improves performance. The old version was 10x slower than InputStream, while the new version is +30%. -- Generalize PositionalBufferedStream main() method for performance testing, now accepts cmdline arguments for the file to read, how many iterations, etc Generalize AsciiLineReader main() method for performance testing -- Now accepts cmdline arguments for the file to read, how many iterations, etc AsciiLineReaderTest and PositionBufferedStreamTest were in src not test/src		2012-06-26 15:28:32 -04:00
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com.google.code.caliper	Killed sonatype repository; it's failed me too many times at this point.	2011-06-09 16:07:02 +00:00
com.google.code.cofoja	Fixing Contracts for Java, and enabling contracts by default for unit/integration tests.	2011-07-08 15:34:39 -04:00
edu.mit.broad	Revving Picard to pick up new SamFileHeaderMerger.	2012-05-02 16:47:28 -04:00
gov.nist	Adding Jama for Ryan.	2010-04-27 14:30:36 +00:00
net.sf	Revving Picard to pick up new SamFileHeaderMerger.	2012-05-02 16:47:28 -04:00
net.sf.gridscheduler	Switched GridEngine from looking from environment variable to using embedded jar.	2011-07-05 21:59:00 -04:00
net.sf.snpeff	SnpEff 2.0.5 support. Re-enabled SnpEff in the HybridSelectionPipeline.	2012-01-03 15:18:36 -05:00
org.broad	Rev tribble to 110. Log is:	2012-06-26 15:28:32 -04:00