..
VectorPairHMM
Update pom versions to mark the start of GATK 3.5 development
2015-05-15 00:44:54 -04:00
c
After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive.
2014-05-19 17:36:41 -04:00
chainFiles
The contig is named MT not M in b36. Delivers PT68890442.
2014-04-08 10:03:47 -04:00
doc
Updated readme in public/doc to just point to the website
2015-03-12 11:52:48 -04:00
external-example
Update pom versions to mark the start of GATK 3.5 development
2015-05-15 00:44:54 -04:00
gatk-engine
Merge pull request #1019 from broadinstitute/rhl_var_index_param_gz
2015-06-17 14:30:20 -04:00
gatk-queue
Move swapExt() methods to QScriptUtils, have versions in QScript class call into the util versions
2015-07-23 10:23:55 -04:00
gatk-queue-extensions-generator
Update pom versions to mark the start of GATK 3.5 development
2015-05-15 00:44:54 -04:00
gatk-queue-extensions-public
Update pom versions to mark the start of GATK 3.5 development
2015-05-15 00:44:54 -04:00
gatk-root
Add spannning deletions allele
2015-06-12 16:43:06 -04:00
gatk-tools-public
Removed walkers for handling Beagle data
2015-07-21 18:36:08 -04:00
gatk-utils
Refactoring of ReferenceConfidenceModel likelihood calculation in non variant sites
2015-07-26 08:33:46 -04:00
gsalib
Update pom versions to mark the start of GATK 3.5 development
2015-05-15 00:44:54 -04:00
java /config
Refactored maven directories and java packages replacing "sting" with "gatk".
2014-05-19 17:36:39 -04:00
package-tests
Update pom versions to mark the start of GATK 3.5 development
2015-05-15 00:44:54 -04:00
perl
Fixing the liftover script to not require strict VCF header validation.
2013-11-07 09:02:17 -05:00
repo
Rev htsjdk to version 1.132 and picard to version 1.131, and switch to using the versions in maven central
2015-05-14 15:26:23 -04:00
src /main
Added faster built executable, non-packaged jars.
2014-11-05 00:30:46 +08:00
pom.xml
Update pom versions to mark the start of GATK 3.5 development
2015-05-15 00:44:54 -04:00
8f6daf70db