gatk3的最后一个经典版本3.8

MauricioCarneiro 3a16ba04d4 Merge pull request #97 from broadinstitute/eb_refactor_sliding_window ... Refactoring of SlidingWindow class in RR to reduce complexity and fix important bug		2013-03-12 12:27:26 -07:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Merge pull request #97 from broadinstitute/eb_refactor_sliding_window	2013-03-12 12:27:26 -07:00
public	Two features useful for ancient DNA processing.	2013-03-09 18:18:13 -05:00
settings	Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample).	2013-02-21 10:14:11 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Fix tests that were consistently or intermittently failing when run in parallel on the farm	2013-03-06 13:56:54 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00