Mauricio Carneiro 116885a450 Removed the "Walker" suffix from all walkers that had it. ... * Did not touch archived walkers... those can be named whatever. * Kept abstract classes that end in Walker untouched (e.g. LocusWalker, ReadWalker, ...) * Renamed a few inner classes due to conflict when stripping off Walker from their outer classes: ContigStats, FlagStats and FastaStats.		2012-07-20 17:27:11 -04:00
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Aligner.xml	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
AnalyzeCovariates.xml	No more hunting down R "resources". As a tradeoff Rscript cannot be specified on the commandline and will be found in the environment path.	2011-10-27 14:17:07 -04:00
CreatePackager.xsl	Build system round 2: finished preparing the packaging system for dual protected/lite releases	2012-05-29 13:54:51 -04:00
GATK-Picard.xml	Removed the "Walker" suffix from all walkers that had it.	2012-07-20 17:27:11 -04:00
GATKEngine.xml	Build system round 2: finished preparing the packaging system for dual protected/lite releases	2012-05-29 13:54:51 -04:00
GenomeAnalysisTK.xml	Build system round 2: finished preparing the packaging system for dual protected/lite releases	2012-05-29 13:54:51 -04:00
GenomeAnalysisTKLite.xml	Temporary fake release directories for Bamboo testing purposes	2012-05-31 16:04:07 -04:00
PicardPrivate.xml	Revved Picard to incorporate tfennell's AsyncSAMFileWriter.	2011-12-06 10:37:42 -05:00
Queue.xml	Build system round 2: finished preparing the packaging system for dual protected/lite releases	2012-05-29 13:54:51 -04:00
QueueEngine.xml	Build system round 2: finished preparing the packaging system for dual protected/lite releases	2012-05-29 13:54:51 -04:00
QueueLite.xml	Temporary fake release directories for Bamboo testing purposes	2012-05-31 16:04:07 -04:00