Mauricio Carneiro eb33da6820 Added support to reduce reads to Callable Loci ... -- added calls to representativeCount() of the pileup instead of using ++ -- renamed CallableLoci integration test -- added integration test for reduce read support on callable loci		2013-03-21 15:53:04 -04:00
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CNV	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
coverage	Added support to reduce reads to Callable Loci	2013-03-21 15:53:04 -04:00
qc	Fix runtime public -> protected dependencies in the test suite	2013-02-26 21:19:12 -05:00
readutils	PrintReads writes a header when used with -BQSR	2013-02-14 22:19:14 -05:00
variantutils	Fixed bug in SelectVariants where maxIndelSize argument wasn't getting applied to deletions.	2013-03-13 15:11:34 -04:00
BAQIntegrationTest.java	Update MD5s to reflect version number change in the BAM header	2013-02-01 13:51:31 -05:00