gatk3的最后一个经典版本3.8

Mark DePristo 39f2e811e5 Increase max cigar elements from SW before failing path creation to 20 from 6 ... -- This allows more diversity in paths, which is sometimes necessary when we cannot simply graphs that have large bubbles		2013-03-26 14:27:18 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Increase max cigar elements from SW before failing path creation to 20 from 6	2013-03-26 14:27:18 -04:00
public	Display the active MappingQualityFilter if mmq > 0 in the HaplotypeCaller	2013-03-26 14:27:18 -04:00
settings	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Fix tests that were consistently or intermittently failing when run in parallel on the farm	2013-03-06 13:56:54 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00