Eric Banks 52067f0549 Handle merge conflicts		2013-01-06 12:29:12 -05:00
..
ContextCovariateUnitTest.java	Cleanup BQSR classes	2012-07-31 08:11:03 -04:00
CycleCovariateUnitTest.java	The user can now set the maximum allowable cycle on the command-line with --maximum_cycle_value. This value is (now) enforced in the Cycle covariate and a User Error is thrown if the maximum value is passed (with a helpful error message). Added unit tests to cover this new functionality.	2012-11-20 22:41:57 -05:00
EventTypeUnitTest.java	Cleanup and unit tests for EventType and ReadRecalibrationInfo in BQSR	2013-01-04 11:39:25 -05:00
QualQuantizerUnitTest.java	Ready for full-scale evaluation adaptive BQSR contexts	2012-08-03 16:02:53 -04:00
ReadCovariatesUnitTest.java	Cleanup BQSR classes	2012-07-31 08:11:03 -04:00
ReadGroupCovariateUnitTest.java	Cleanup BQSR classes	2012-07-31 08:11:03 -04:00
RecalDatumUnitTest.java	Handle long->int precision in Bayesian estimate	2013-01-06 12:26:32 -05:00
RecalUtilsUnitTest.java	Hooking up the Bayesian estimate code for calculating Qemp in BQSR; various fixes after adding unit tests.	2013-01-04 14:43:11 -05:00
RecalibrationReportUnitTest.java	Handle merge conflicts	2013-01-06 12:29:12 -05:00
RecalibrationTablesUnitTest.java	Cleanup and more unit tests for RecalibrationTables in BQSR	2013-01-05 12:50:27 -05:00
RecalibrationTestUtils.java	BQSR optimization: read group x quality score calibration table is thread-local	2012-12-24 13:35:58 -05:00