gatk3的最后一个经典版本3.8

Ryan Poplin 396bce1f28 Reverting this change until we can figure out the right thing to do here.		2013-01-09 10:51:30 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Reverting this change until we can figure out the right thing to do here.	2013-01-09 10:51:30 -05:00
public	Bug fixes related to HC's GGA mode. Tracking just the artificial allele isn't sufficient when there are multiple GGA records that change the reference basis. Also, duplicated records screw up the tracking of merged alleles.	2013-01-09 10:00:46 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Re-enabling contracts in tests in build.xml	2013-01-02 11:29:25 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Use build jars in test classpaths by default	2012-11-28 22:57:04 -05:00