Eric Banks 396b7e0933 Fixed the intermittent PairHMM unit test failure. ... The issue here is that the OptimizedLikelihoodTestProvider uses the same basic underlying class as the BasicLikelihoodTestProvider and we were using the BasicTestProvider functionality to pull out tests of that class; so if the optimized tests were run first we were unintentionally running those same tests again with the basic ones (but expecting different results).		2013-02-25 15:05:13 -05:00
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src/org/broadinstitute/sting	Refactored PairHMM.initialize to first take haplotype max length and then the read max length so that it is consistent with other PairHMM methods.	2013-02-25 15:04:23 -05:00
test/org/broadinstitute/sting	Fixed the intermittent PairHMM unit test failure.	2013-02-25 15:05:13 -05:00