gatk3的最后一个经典版本3.8

Eric Banks 396b7e0933 Fixed the intermittent PairHMM unit test failure. ... The issue here is that the OptimizedLikelihoodTestProvider uses the same basic underlying class as the BasicLikelihoodTestProvider and we were using the BasicTestProvider functionality to pull out tests of that class; so if the optimized tests were run first we were unintentionally running those same tests again with the basic ones (but expecting different results).		2013-02-25 15:05:13 -05:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected/java	Fixed the intermittent PairHMM unit test failure.	2013-02-25 15:05:13 -05:00
public	Refactored PairHMM.initialize to first take haplotype max length and then the read max length so that it is consistent with other PairHMM methods.	2013-02-25 15:04:23 -05:00
settings	Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample).	2013-02-21 10:14:11 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Updating TestNG to the latest version	2013-02-22 09:40:23 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updating TestNG to the latest version	2013-02-22 09:40:23 -05:00