gatk3的最后一个经典版本3.8

Mauricio Carneiro 3960733c88 Fix PrintReads out of space issue ... Problem: -------- Print Reads was running out of disk space when using the -BQSR option even for small bam files Solution: --------- Configure setupWriter to expect pre sorted reads		2013-04-09 08:19:52 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Address reviewer comments	2013-04-08 12:48:20 -04:00
public	Fix PrintReads out of space issue	2013-04-09 08:19:52 -04:00
settings	Don't allow users to specify keys and IDs that contain angle brackets or equals signs (not allowed in VCF spec).	2013-04-05 00:52:32 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Disable Contracts for Java for tests	2013-04-04 11:56:17 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00