sjia 3916e165fb New walker to output haplotypes for each read (for SNP analysis or imputation, etc) ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1707 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-23 20:26:43 +00:00
..
alignment	Unidirectional alignments with mismatches now working. Significant refactoring will be required.	2009-09-22 19:05:10 +00:00
gatk	Added a sequenom rod to empower Carrie to convert 1KG validation SNPs to sequenom format	2009-09-23 20:22:09 +00:00
playground	New walker to output haplotypes for each read (for SNP analysis or imputation, etc)	2009-09-23 20:26:43 +00:00
secondarybase	Cleanup...deprecate FastaSequenceFile2 in favor of IndexedFastaSequenceFile or ReferenceSequenceFile from Picard, depending on the application.	2009-07-08 18:49:08 +00:00
utils	fixing VariantEvalWalkerIntegrationTest md5 sums, a couple comment changes, and a little bit of cleanup	2009-09-22 20:54:47 +00:00