droazen d650efd40a Fix for bug GSA-449: Intervals that are not in GATK format are not validated ... to the same standard as GATK format intervals. Full validation against contig bounds is now performed for all intervals, regardless of their source. Also fixed a few tests for validation exclusions that were backwards. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5698 348d0f76-0448-11de-a6fe-93d51630548a		2011-04-27 18:12:10 +00:00
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net/sf	Did some refactoring which broke some unit tests, and then failed to run	2011-04-08 03:31:52 +00:00
org/broadinstitute/sting	Fix for bug GSA-449: Intervals that are not in GATK format are not validated	2011-04-27 18:12:10 +00:00