Ryan Poplin 85905dba92 Bugfix for GGA mode in UG silently ignoring indels ... -- Started by Mark. Finished up by Ryan. -- GGA mode still respected glm argument for SNP and INDEL models, so that you would silently fail to genotype indels at all if the -glm INDEL wasn't provided, but you'd still emit the sites, so you'd see records in the VCF but all alleles would be no calls. -- https://www.pivotaltracker.com/story/show/48924339 for more information -- [resolves #48924339]		2013-05-24 13:47:26 -04:00
..
java	Bugfix for GGA mode in UG silently ignoring indels	2013-05-24 13:47:26 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00