kiran 38d9f7b903 Renamed ReferenceContext's getSimpleBase() method to getBaseIndex() ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2334 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-11 20:14:39 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Renamed ReferenceContext's getSimpleBase() method to getBaseIndex()	2009-12-11 20:14:39 +00:00
test/org/broadinstitute/sting	Now that we always output the VCF header, make sure that we correctly handle the situation where there are no records in the file. Added unit tests as well.	2009-12-11 19:51:05 +00:00