Mark DePristo 38cc496de8 Move SomaticIndelDetector and associated tools and libraries into private/andrey package ... -- Intermediate commit on the way to archiving SomaticIndelDetector and other tools. -- SomaticIndelDetector, PairMaker and RemapAlignments tools have been refactored into the private andrey package. All utility classes refactored into here as well. At this point, the SomaticIndelDetector builds in this version of the GATK. -- Subsequent commit will put this code into the archive so it no longer builds in the GATK		2012-12-29 14:34:08 -05:00
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config	…
src	Move SomaticIndelDetector and associated tools and libraries into private/andrey package	2012-12-29 14:34:08 -05:00
test	Enabling the Recal Report unit test (which looks like it was never ever enabled)	2012-12-26 15:35:50 -05:00