Valentin Ruano-Rubio d563072282 Fix for CombineGVCFs and GenotypeGVCFs recurrent exception about missing PLs ... Story: https://www.pivotaltracker.com/story/show/68220438 Changes: - PL-less input genotypes are now uncalled and so non-variant sites when combining GVCFs. - HC GVCF/BP_RESOLUTION Mode now outputs non-variant sites in sites covered by deletions. - Fixed existing tests Test: - HaplotypeCallerGVCFIntegrationTest - ReferenceConfidenceModelUnitTest - CombineGVCFsIntegrationTest		2014-05-02 09:21:06 -04:00
..
gatk-protected	Fix for CombineGVCFs and GenotypeGVCFs recurrent exception about missing PLs	2014-05-02 09:21:06 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00