gatk-3.8/java/test/org/broadinstitute/sting/playground/gatk/walkers
ebanks 86aa82caf8 Missed this integration test during my move of VC from Tribble
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@6078 348d0f76-0448-11de-a6fe-93d51630548a
2011-06-24 20:07:25 +00:00
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HLAcaller Committing the fragment-based calling code. Results look great in all datasets (will show this at 1000G this week with Ryan). Note that this is an intermediate commit. The code needs to be cleaned up and the fragmentation code needs to be moved up into LocusIteratorByState. This should all happen later this week, but I don't want Ryan to have to keep running from my own personal Sting directory. The current crappy implementation adds ~10% to the runtime, but that should all go away in the next iteration. 2011-01-23 05:04:17 +00:00
duplicates Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00
reducereads Fixed up md5s 2011-06-16 16:20:41 +00:00
validation Missed this integration test during my move of VC from Tribble 2011-06-24 20:07:25 +00:00