delangel 3873dccb35 First fully functional (though preliminary) version of walker that takes an input VCF and outputs a Beagle .bgl file that can be used for missing genotype calls/haplotype imputation. For now, only supported input format is likelihood format for unrelated individuals. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3444 348d0f76-0448-11de-a6fe-93d51630548a		2010-05-26 21:03:23 +00:00
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filters	Initial commit of tools under development for data QC through firehose.	2010-02-12 19:13:24 +00:00
refdata	VCF moved over to tribble.	2010-05-05 17:28:48 +00:00
tools	For dealing with slightly malformatted BAMs - mark every alignment as primary, or in the case of some BAM files from UWash, supply the sample information for each read group.	2010-05-10 15:17:05 +00:00
walkers	First fully functional (though preliminary) version of walker that takes an input VCF and outputs a Beagle .bgl file that can be used for missing genotype calls/haplotype imputation. For now, only supported input format is likelihood format for unrelated individuals.	2010-05-26 21:03:23 +00:00