gatk3的最后一个经典版本3.8

David Roazen 3861212dab Fix inefficiency in FilePointer GenomeLoc validation ... Validation of GenomeLocs in the FilePointer class was extremely inefficient when the GenomeLocs were added one at a time rather than all at once. Appears to mostly fix GSA-604		2012-10-11 19:55:14 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Turning on allele trimming for the haplotype caller.	2012-10-10 10:47:26 -04:00
public	Fix inefficiency in FilePointer GenomeLoc validation	2012-10-11 19:55:14 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	Proper error handling in NanoScheduler	2012-09-19 17:03:13 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00