Mauricio Carneiro 7c7ca0d799 fixing bug with fastq extension ... * PPP only recognized .fasta and .fq, failing when the user provided a .fastq file. Fixed.		2012-01-24 11:02:15 -05:00
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CollectionUtils.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
EmailMessage.scala	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00
EmailSettings.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
Logging.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
PrimitiveOptionConversions.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
QJobReport.scala	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00
QScriptUtils.scala	fixing bug with fastq extension	2012-01-24 11:02:15 -05:00
ReflectionUtils.scala	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00
Retry.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
RetryException.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
ScalaCompoundArgumentTypeDescriptor.scala	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00
ShellUtils.scala	Queue now properly escapes all shell arguments in generated shell scripts	2011-12-01 18:13:44 -05:00
StringFileConversions.scala	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00
SystemUtils.scala	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00
TextFormatUtils.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
VCF_BAM_utilities.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00