Khalid Shakir ac33eda231 Queue patches. ... Fixed Queue bug with bad localhost addresses. Spaces in job names, while fine in GridEngine 6, break in (Son of) GE8.		2014-10-23 22:59:19 +08:00
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VectorPairHMM	Update pom versions to mark the start of GATK 3.3 development	2014-07-17 12:09:33 -04:00
c	After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive.	2014-05-19 17:36:41 -04:00
chainFiles	The contig is named MT not M in b36. Delivers PT68890442.	2014-04-08 10:03:47 -04:00
doc	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
external-example	Various fixes for package tests.	2014-09-04 15:30:31 -04:00
gatk-engine	Do not process a variant if it is too large (> readLength), and log an error	2014-10-20 15:51:32 -04:00
gatk-queue	Queue patches.	2014-10-23 22:59:19 +08:00
gatk-queue-extensions-generator	Moved arguments controlling options in output files into the engine	2014-09-05 21:18:11 -04:00
gatk-queue-extensions-public	Updated license information	2014-10-14 17:10:12 -04:00
gatk-root	Added -writeFullFormat engine-level argument	2014-09-17 08:25:27 -04:00
gatk-tools-public	Minor documentation clarifications	2014-10-22 17:54:11 -04:00
gatk-utils	Now passing in the path to the GATK directory to tests.	2014-09-02 01:40:59 +08:00
gsalib	Changed license of gsalib R package from BSD to MIT	2014-10-16 21:37:07 -04:00
java/config	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
package-tests	Various fixes for package tests.	2014-09-04 15:30:31 -04:00
perl	Fixing the liftover script to not require strict VCF header validation.	2013-11-07 09:02:17 -05:00
repo	Added -writeFullFormat engine-level argument	2014-09-17 08:25:27 -04:00
src/main/scripts/shell	For now, executing the delete_maven_links.sh just ahead of creating the symbolic links during the process-test-resources phase.	2014-06-25 02:32:15 +08:00
pom.xml	Update pom versions to mark the start of GATK 3.3 development	2014-07-17 12:09:33 -04:00