gatk3的最后一个经典版本3.8

David Roazen 3744d1a596 Collapse the downsampling fork in the GATK engine ... With LegacyLocusIteratorByState deleted, the legacy downsampling implementation was already non-functional. This commit removes all remaining code in the engine belonging to the legacy implementation.		2013-01-28 01:50:30 -05:00
licensing	Refrain from pushing symlinks into the repo... not all filesystems treat it correctly	2013-01-22 15:18:19 -07:00
protected/java	Tool to calculate per base coverage distribution	2013-01-27 23:38:46 -05:00
public	Collapse the downsampling fork in the GATK engine	2013-01-28 01:50:30 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Updating Queue maven version to 0.0.2	2013-01-10 13:46:49 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	ReadBackedPileup cleanup	2013-01-11 15:17:18 -05:00