36c27155af
remove TODO comment after activeProbThreshold recover static ACTIVE_PROB_THRESHOLD for unit tests Add min/max values for active_probability_threshold parameter Move activeProbThreshold parameter to GATKArguemtnCollection define ACTIVE_PROB_THRESHOLD in unit tests add construction of argCollection in in ctor Move arguments from GATKArgumentCollection to ActiveRegionWalker Throw exception if threshold < 0 or > 1 in ActivityProfile ctor max propogation distance parameter to ActiveRegionWalker for AcrtivityProfile Use polymorphic getMaxProbPropagationDistance() so BandPassActivityProfile computes the crrect region size cutoff Get the maxProbPropagationDistance from the super class's method, instead of directly, this is safer Removed extraneous command line imports and make maxProbPropagationDistance a hidden argument remove limit check for activeProbThreshold, not necessary because the check is made when imput as a command line arg Remove extra 'region' in the doxygen param description for maxProbPropagationDistance |
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| licensing | ||
| protected | ||
| public | ||
| settings/helpTemplates | ||
| .gitignore | ||
| README.md | ||
| ant-bridge.sh | ||
| intellij_example.tar.bz2 | ||
| pom.xml | ||