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Laura Gauthier 4373922ee6 Update GATK to work with latest htsjdk 
ValidationStringency was moved from htsjdk.samtools.SAMFileReader to htsjdk.samtools
samtools find BAM index file method was also moved (and made public!)
 		2014-07-30 12:05:14 -04:00
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htsjdk-1.118.1556.jar Update GATK to work with latest htsjdk 2014-07-30 12:05:14 -04:00
htsjdk-1.118.1556.pom Update GATK to work with latest htsjdk 2014-07-30 12:05:14 -04:00