Laura Gauthier 4373922ee6 Update GATK to work with latest htsjdk ... ValidationStringency was moved from htsjdk.samtools.SAMFileReader to htsjdk.samtools samtools find BAM index file method was also moved (and made public!)		2014-07-30 12:05:14 -04:00
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main	Update GATK to work with latest htsjdk	2014-07-30 12:05:14 -04:00
test/scala/org/broadinstitute/gatk/queue	Fixed GATK docs artifact, moved protected ExampleUG tests.	2014-05-22 21:03:55 -04:00