gatk-3.8/protected/gatk-protected
Eric Banks eb463b505d Remove a whole bunch of unused annotations from gVCF output.
AC,AF,AN,FS,QD - they'll all be recomputed later.
BLOCK_SIZE and MIN_GQ were not necessary.

I also made the StrandBiasBySample annotation forced on when in gVCF mode.
It turns out that its output wasn't compatible with BCF so I patched it (and the variant jar too).
2014-02-07 08:49:36 -05:00
..
src Remove a whole bunch of unused annotations from gVCF output. 2014-02-07 08:49:36 -05:00
pom.xml Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution. 2014-02-06 08:25:38 -05:00