Matt Hanna 3642a73c07 Performance improvements for dynamically merging BAMs in read walkers. ... This change and my previous change have dropped runtime when dynamically merging 2k BAM files from 72.6min/1M reads to 46.8sec/1M reads. Note that many of these changes are stopgaps -- the real problem is the way ReadWalkers interface with Picard, and I'll have to work with Tim&Co to produce a more maintainable patch.		2011-12-16 09:37:44 -05:00
..
config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Performance improvements for dynamically merging BAMs in read walkers.	2011-12-16 09:37:44 -05:00
test	Refactor of ReadClipper unit tests	2011-12-15 19:05:43 -05:00