Eric Banks 360e2ba87e Fixed bug reported on the forum where using the --exclude_sample_file argument in SV was giving bad results. ... Added integration test. https://www.pivotaltracker.com/s/projects/793457/stories/47399245		2013-04-26 12:23:11 -04:00
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R	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
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doc	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
java	Fixed bug reported on the forum where using the --exclude_sample_file argument in SV was giving bad results.	2013-04-26 12:23:11 -04:00
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packages	ValidatingPileup was renamed to CheckPileup	2013-02-15 11:56:19 -05:00
perl	Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters)	2012-06-07 16:56:32 -04:00
scala	Adding the 1000G_phase1.snps.high_confidence callset to the GATK resource bundle for use in the April 2013 updated best practices.	2013-04-24 11:41:32 -04:00
testdata	Updating the exampleGRP.grp test file	2013-04-13 09:07:13 -04:00