Ryan Poplin 35e803e110 Merged bug fix from Stable into Unstable		2012-07-26 14:00:04 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Merged bug fix from Stable into Unstable	2012-07-26 14:00:04 -04:00
test	Improvements to indel calling in pool caller: a) Compute per-read likelihoods in reference sample to determine wheter a read is informative or not. b) Fixed bugs in unit tests. c) Fixed padding-related bugs when computing matches/mismatches in ErrorModel, d) Added a couple of more integration tests to increase test coverage, including testing odd ploidy	2012-07-26 13:43:00 -04:00