Eric Banks 35699a8376 Move bqsr utils to protected		2013-01-07 15:41:21 -05:00
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src/org/broadinstitute/sting	Move bqsr utils to protected	2013-01-07 15:41:21 -05:00
test/org/broadinstitute/sting	Bug fix in the HC's allele mapping for multi-allelic events. Using the allele alone as a key isn't sufficient because alleles change when the reference allele changes during VariantContextUtils.simpleMerge for multi-allelic events.	2013-01-07 11:05:44 -05:00