gatk3的最后一个经典版本3.8

David Roazen 35483a7eef Update MD5s for PrintReads with BQSR Integration Test ... The MD5s for these tests were changed in commit 87435f1074615b2cd016f042980109fd53962c8d to match the output of a broken version of BaseRecalibration. With the patch in commit c397102ecc1fd1d2cd8f209a8f358ab4a60b50a7, the output once again matches the *original* MD5s for these tests, and does not vary as you increase -nct. Final resolution to GSA-632		2012-10-26 14:25:25 -04:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Update MD5s for PrintReads with BQSR Integration Test	2012-10-26 14:25:25 -04:00
public	Merge branch 'master' of ssh://gsa2/humgen/gsa-scr1/gsa-engineering/git/unstable	2012-10-26 13:20:41 -04:00
settings	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00