ebanks 341e752c6c 1) AlleleBalance is no longer a standard annotation, but the Allelic Depth (AD) is for each sample. ... 2) Small fixes in the VCFWriter: a) Trailing missing values weren't being removed if their count was > 1 (e.g. ".,.") b) We were handling key values that were Lists, but not Arrays. We now handle both. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3956 348d0f76-0448-11de-a6fe-93d51630548a		2010-08-06 12:05:14 +00:00
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net/sf/picard/reference	IndexedFastaSequenceFile is now in Picard; transitioning to that implementation.	2010-07-01 04:40:31 +00:00
org/broadinstitute/sting	1) AlleleBalance is no longer a standard annotation, but the Allelic Depth (AD) is for each sample.	2010-08-06 12:05:14 +00:00