gatk-3.8/java
ebanks 341e752c6c 1) AlleleBalance is no longer a standard annotation, but the Allelic Depth (AD) is for each sample.
2) Small fixes in the VCFWriter:
a) Trailing missing values weren't being removed if their count was > 1 (e.g. ".,.")
b) We were handling key values that were Lists, but not Arrays.  We now handle both.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3956 348d0f76-0448-11de-a6fe-93d51630548a
2010-08-06 12:05:14 +00:00
..
config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src 1) AlleleBalance is no longer a standard annotation, but the Allelic Depth (AD) is for each sample. 2010-08-06 12:05:14 +00:00
test 1) AlleleBalance is no longer a standard annotation, but the Allelic Depth (AD) is for each sample. 2010-08-06 12:05:14 +00:00