Mark DePristo 3414ecfe2e Restored serial version of reader initialization. Serial mode is default, as the performance gains aren't so huge. ... -- Serial version can be re-enabled with a static boolean, if we decide to return to the serial version -- Comparison of serial and parallel reader with cached and uncached files: Initialization time: serial with 500 fully cached BAMs: 8.20 seconds Initialization time: serial with 500 uncached BAMs : 197.02 seconds Initialization time: parallel with 500 fully cached BAMs: 30.12 seconds Initialization time: parallel with 500 uncached BAMs : 75.47 seconds		2011-12-16 09:22:10 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Restored serial version of reader initialization. Serial mode is default, as the performance gains aren't so huge.	2011-12-16 09:22:10 -05:00
test	Added unit test to catch Ryan's exception	2011-12-14 16:58:14 -05:00