gatk3的最后一个经典版本3.8

Mark DePristo 33ecec535d Turn off the LD merging code by default ... -- It's just too hard to interpret the called variation when we merge variants via LD. -- Can now be turned on with -mergeVariantsViaLD -- Update MD5s		2013-04-09 10:08:06 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Turn off the LD merging code by default	2013-04-09 10:08:06 -04:00
public	Make ActiveRegionTraversal robust to excessive coverage	2013-04-08 15:48:19 -04:00
settings	Don't allow users to specify keys and IDs that contain angle brackets or equals signs (not allowed in VCF spec).	2013-04-05 00:52:32 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Disable Contracts for Java for tests	2013-04-04 11:56:17 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00