hanna 26e84d7fd6 Added index iteration for ReferenceSequenceFile interface compatibility. ... Added better error checking for querying past the end of a contig. Lots more testing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@429 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-15 17:17:11 +00:00
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gatk	Added changes to shattering, refactored SAMBAM into SAM	2009-04-15 13:52:56 +00:00
utils	Added index iteration for ReferenceSequenceFile interface compatibility.	2009-04-15 17:17:11 +00:00
BaseTest.java	Added some output to all the classes, including build in runtime analysis	2009-04-14 19:14:53 +00:00