gatk3的最后一个经典版本3.8

David Roazen 3390fc7d67 Include cofoja jar in classpath when testing release jars ... -Even though we're no longer compiling/using contracts in tests, we still need the cofoja jar in the classpath when testing the release jars due to some bad behavior on the part of TestNG in not being able to handle missing annotation classes. -We don't need to package the cofoja classes in the actual GATK jar, however (and we never have).		2013-04-30 22:16:58 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Setting the reduce reads count tag was all wrong in a previous commit; fixing.	2013-04-30 13:45:42 -04:00
public	Setting the reduce reads count tag was all wrong in a previous commit; fixing.	2013-04-30 13:45:42 -04:00
settings	Rev picard, sam-jdk, tribble, and variant jars to version 1.90.1442	2013-04-25 14:05:24 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
build.xml	Include cofoja jar in classpath when testing release jars	2013-04-30 22:16:58 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00