sathibault 336050ab71 Merge branch 'master' into st_fpga_hmm ... Conflicts: protected/java/src/org/broadinstitute/sting/gatk/walkers/haplotypecaller/HaplotypeCaller.java protected/java/src/org/broadinstitute/sting/gatk/walkers/haplotypecaller/LikelihoodCalculationEngine.java		2013-06-13 07:28:24 -05:00
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java	Merge branch 'master' into st_fpga_hmm	2013-06-13 07:28:24 -05:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00