gatk3的最后一个经典版本3.8

Mauricio Carneiro 33290bfe0c Added integration test to catch the read off contig in ReduceReads. ... So upstream changes won't break it again.		2012-12-12 13:49:54 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Added integration test to catch the read off contig in ReduceReads.	2012-12-12 13:49:54 -05:00
public	Revert "Bug fix for RR: don't let the softclip start position be less than 1"	2012-12-12 13:09:39 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Refactored entire NA12878KB to allow us to easily build a na12878kb.jar for IGV integration	2012-11-29 14:38:09 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Use build jars in test classpaths by default	2012-11-28 22:57:04 -05:00