asivache 3308d956f4 Added utility shortcut method: getOriginalQualsInCycleOrder(read) ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3851 348d0f76-0448-11de-a6fe-93d51630548a		2010-07-22 15:44:25 +00:00
..
alignment	IndexedFastaSequenceFile is now in Picard; transitioning to that implementation.	2010-07-01 04:40:31 +00:00
analyzecovariates	Fix for added EOF in csv file	2010-07-13 16:09:48 +00:00
commandline	Workaround for scala trait erasing parameterized types:	2010-07-07 03:15:10 +00:00
gatk	a) Bug fix in VCFHeader parsing - Info fields were not being parsed properly, with the result that the Count field was not being properly displayed in records (e.g. if Count=0 for a particular field, the INFO tag was still being displayed as ...;Field=x;... instead of ...;Field;...	2010-07-22 02:36:45 +00:00
oneoffprojects	a) Bug fix in VCFHeader parsing - Info fields were not being parsed properly, with the result that the Count field was not being properly displayed in records (e.g. if Count=0 for a particular field, the INFO tag was still being displayed as ...;Field=x;... instead of ...;Field;...	2010-07-22 02:36:45 +00:00
playground	1) When quals/GQs are really integers (x.00), strip off the floating points.	2010-07-20 18:01:45 +00:00
queue/function/scattergather	Started path of deprecation of Sting's @Argument by splitting the annotation into @Output and @Input. Anything that's not an @Output should be an @Input.	2010-06-25 20:51:13 +00:00
utils	Added utility shortcut method: getOriginalQualsInCycleOrder(read)	2010-07-22 15:44:25 +00:00