kshakir 32fc221ffe Replaced pattern matched pipeline spec with annotated objects. ... Old version is no longer available. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3558 348d0f76-0448-11de-a6fe-93d51630548a		2010-06-15 04:43:46 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Replaced pattern matched pipeline spec with annotated objects.	2010-06-15 04:43:46 +00:00
test/org/broadinstitute/sting	A simple utility class that implements a merging Iterator<GenomeLoc> built over an interval or bed file (this is NOT a rod, but rather a direct line-by-line file reader that converts strings to genome locs on the fly and merges overlapping intervals)	2010-06-14 15:54:37 +00:00