Mauricio Carneiro 32ee2c7dff Refactored the compression interface per sample in ReduceReadsa ... The CompressionStash is now responsible for keeping track of all intervals that must be kept uncompressed by all samples. In general this is a list generated by a tumor sample that will enforce all normal samples to abide. - Updated ReduceReads integration tests - Sliding Window is now using the CompressionStash (single sample). DEV-104 #resolve #time 3m		2012-10-17 16:40:40 -04:00
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bqsr	updating BQSR integration tests	2012-09-19 14:10:34 -04:00
compression/reducereads	Refactored the compression interface per sample in ReduceReadsa	2012-10-17 16:40:40 -04:00
genotyper	Scalability test for EXACT models	2012-10-17 14:15:11 -04:00
haplotypecaller	Increasing the precision of MathUtils.approximateLog10SumLog10 from 1E-3 to 1E-4. Genotyper integration tests change as a result. Expanding the unit tests of MathUtils.log10sumLog10.	2012-10-15 13:24:32 -04:00