gatk3的最后一个经典版本3.8

Guillermo del Angel 32e377a0db Fix bugs so that we can pass in 2 simultaneous samples in metadata (no co-cleaning yet but at least we don't need to run pipeline twice) to produce 2 bams. Pasted temp mutect so it's also run at the end of the run		2012-10-12 14:39:28 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Turning on allele trimming for the haplotype caller.	2012-10-10 10:47:26 -04:00
public	Merge branch 'develop' into unstable	2012-10-12 14:19:42 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	adding some directories to gitignore	2012-10-10 13:26:13 -04:00
build.xml	Proper error handling in NanoScheduler	2012-09-19 17:03:13 -04:00
intellij_example.tar.bz2	Adding intellij example configuration files	2012-10-10 13:20:30 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00