depristo 32d5397c01 Experimental support for sided annotations. Currently not more/less valuable than two-tailed testing. Future experiments are needed ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4864 348d0f76-0448-11de-a6fe-93d51630548a		2010-12-17 15:08:31 +00:00
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alignment	Bug fixes for the bwa aligner and changes to support compiling against newer releases of the bwa code base.	2010-12-17 14:49:15 +00:00
analyzecovariates	Updating doc text	2010-11-24 21:34:14 +00:00
commandline	Fixed recently introduced multiplexer issue where DoC couldn't be written	2010-12-14 19:35:15 +00:00
datasources/pipeline	Updated from SnakeYAML 1.6 to 1.7.	2010-09-22 19:47:49 +00:00
gatk	Experimental support for sided annotations. Currently not more/less valuable than two-tailed testing. Future experiments are needed	2010-12-17 15:08:31 +00:00
jna	Removed LibBat.SUB2_BSUB_BLOCK since the use of it exits the JVM.	2010-12-14 19:57:20 +00:00
oneoffprojects	Another privately-owned class to add before re-checking out repository	2010-12-16 18:14:51 +00:00
playground	Eric broke the build. Eric broke the build.	2010-12-15 17:01:38 +00:00
queue	Updated the Queue GATK generator and packaging to include more dependencies for fullCallingPipeline.q.	2010-11-30 15:29:40 +00:00
utils	Fix for f***ed up BWA alignments that adhere to SAM specs	2010-12-14 17:12:25 +00:00