Guillermo del Angel 32a77a8a56 Prevent out of bound error in case read span > reference context + indel length. Can happen in RNAseq reads with long N CIGAR operators in the middle.		2011-11-22 13:57:24 -05:00
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R	Compacting pdfs when running under R 2.13+.	2011-10-27 14:51:56 -04:00
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java	Prevent out of bound error in case read span > reference context + indel length. Can happen in RNAseq reads with long N CIGAR operators in the middle.	2011-11-22 13:57:24 -05:00
packages	No more hunting down R "resources". As a tradeoff Rscript cannot be specified on the commandline and will be found in the environment path.	2011-10-27 14:17:07 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Bug fix for LocusScatterFunction when no intervals are provided	2011-11-04 10:55:09 -04:00
testdata	Oops, forgot the PED test file	2011-10-05 21:09:08 -07:00